IL_7O81_310

3D structure

PDB id

7O81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

G(OMU)G*CC

Length

5 nucleotides

Bulged bases

7O81|1|A2|OMU|1327

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O81_310 not in the Motif Atlas

Homologous match to IL_8C3A_455

Geometric discrepancy: 0.1726

The information below is about IL_8C3A_455

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

94

Unit IDs

7O81|1|A2|G|1326
7O81|1|A2|OMU|1327
7O81|1|A2|G|1328
*
7O81|1|A2|C|1503
7O81|1|A2|C|1504

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AC

Ribosomal protein S27a

Chain AG

uS14

Chain AU

EDF1

Chain Aj

Ribosomal protein eS10