IL_7O81_316

3D structure

PDB id

7O81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAAU*AAAUGUG

Length

12 nucleotides

Bulged bases

7O81|1|B5|G|119, 7O81|1|B5|U|150

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7O81|1|B5|C|118
7O81|1|B5|G|119
7O81|1|B5|A|120
7O81|1|B5|A|121
7O81|1|B5|U|122
*
7O81|1|B5|A|147
7O81|1|B5|A|148
7O81|1|B5|A|149
7O81|1|B5|U|150
7O81|1|B5|G|151
7O81|1|B5|U|152
7O81|1|B5|G|153

Current chains

Chain B5

28S rRNA

Nearby chains

Chain B8

5.8S ribosomal RNA; 5.8S rRNA

Chain BG

Ribosomal protein eL8

Chain BN

Ribosomal protein L15

Chain Bh

uL29