IL_7O81_322
3D structure
- PDB id
- 7O81 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- (OMG)A(A2M)AG*CUAGUAGC
- Length
- 13 nucleotides
- Bulged bases
- 7O81|1|B5|A|1605, 7O81|1|B5|G|1609
- QA status
- Modified nucleotides: OMG, A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7O81_322 not in the Motif Atlas
- Homologous match to IL_8C3A_030
- Geometric discrepancy: 0.0888
- The information below is about IL_8C3A_030
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_17470.7
- Basepair signature
- cWW-tWW-L-R-tWH-L-cWW
- Number of instances in this motif group
- 7
Unit IDs
7O81|1|B5|OMG|1477
7O81|1|B5|A|1478
7O81|1|B5|A2M|1479
7O81|1|B5|A|1480
7O81|1|B5|G|1481
*
7O81|1|B5|C|1603
7O81|1|B5|U|1604
7O81|1|B5|A|1605
7O81|1|B5|G|1606
7O81|1|B5|U|1607
7O81|1|B5|A|1608
7O81|1|B5|G|1609
7O81|1|B5|C|1610
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain BC
- 60S ribosomal protein L4
- Chain BL
- Ribosomal protein eL13
- Chain BN
- Ribosomal protein L15
- Chain Ba
- 60S ribosomal protein L27a
- Chain Bj
- Ribosomal protein L37
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