IL_7O81_323
3D structure
- PDB id
- 7O81 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CGGUAA*(PSU)AAAUG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7O81_323 not in the Motif Atlas
- Homologous match to IL_8GLP_291
- Geometric discrepancy: 0.0928
- The information below is about IL_8GLP_291
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_46203.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 2
Unit IDs
7O81|1|B5|C|1671
7O81|1|B5|G|1672
7O81|1|B5|G|1673
7O81|1|B5|U|1674
7O81|1|B5|A|1675
7O81|1|B5|A|1676
*
7O81|1|B5|PSU|1731
7O81|1|B5|A|1732
7O81|1|B5|A|1733
7O81|1|B5|A|1734
7O81|1|B5|U|1735
7O81|1|B5|G|1736
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain B7
- 5S ribosomal RNA; 5S rRNA
- Chain BD
- Ribosomal_L18_c domain-containing protein
- Chain BF
- Ribosomal Protein uL30
- Chain BI
- 60S ribosomal protein L10
- Chain BS
- Ribosomal protein L18a
- Chain BT
- eL21
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