IL_7O81_325
3D structure
- PDB id
- 7O81 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GCGAA(PSU)*AAAC
- Length
- 10 nucleotides
- Bulged bases
- 7O81|1|B5|G|1680
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7O81_325 not in the Motif Atlas
- Homologous match to IL_8C3A_043
- Geometric discrepancy: 0.2086
- The information below is about IL_8C3A_043
- Detailed Annotation
- C-loop with bulged stacked A's
- Broad Annotation
- C-loop
- Motif group
- IL_02509.3
- Basepair signature
- cWW-cWS-cWW-cWW-R-cSH-tWH-R
- Number of instances in this motif group
- 6
Unit IDs
7O81|1|B5|G|1678
7O81|1|B5|C|1679
7O81|1|B5|G|1680
7O81|1|B5|A|1681
7O81|1|B5|A|1682
7O81|1|B5|PSU|1683
*
7O81|1|B5|A|1725
7O81|1|B5|A|1726
7O81|1|B5|A|1727
7O81|1|B5|C|1728
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain B7
- 5S ribosomal RNA; 5S rRNA
- Chain BD
- Ribosomal_L18_c domain-containing protein
- Chain BI
- 60S ribosomal protein L10
- Chain BT
- eL21
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