IL_7O81_340

3D structure

PDB id

7O81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCC*GGCG

Length

7 nucleotides

Bulged bases

7O81|1|B5|C|3891

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O81_340 not in the Motif Atlas

Geometric match to IL_5AOX_001

Geometric discrepancy: 0.2167

The information below is about IL_5AOX_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

7O81|1|B5|C|3866
7O81|1|B5|C|3867
7O81|1|B5|C|3868
*
7O81|1|B5|G|3889
7O81|1|B5|G|3890
7O81|1|B5|C|3891
7O81|1|B5|G|3892

Current chains

Chain B5

28S rRNA

Nearby chains