IL_7O81_346
3D structure
- PDB id
- 7O81 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CAUUG*CCAAGCG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7O81_346 not in the Motif Atlas
- Homologous match to IL_8GLP_315
- Geometric discrepancy: 0.0801
- The information below is about IL_8GLP_315
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_56912.1
- Basepair signature
- cWW-cWW-L-R-L-cWW-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
7O81|1|B5|C|4212
7O81|1|B5|A|4213
7O81|1|B5|U|4214
7O81|1|B5|U|4215
7O81|1|B5|G|4216
*
7O81|1|B5|C|4231
7O81|1|B5|C|4232
7O81|1|B5|A|4233
7O81|1|B5|A|4234
7O81|1|B5|G|4235
7O81|1|B5|C|4236
7O81|1|B5|G|4237
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain BB
- Ribosomal protein L3
- Chain BH
- 60S ribosomal protein L9
- Chain BO
- Ribosomal protein L13a
- Chain BV
- Ribosomal protein L23
- Chain Bm
- 60S ribosomal protein L40
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