IL_7O81_350

3D structure

PDB id

7O81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCCGAAG*CUGGC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O81_350 not in the Motif Atlas

Homologous match to IL_8P9A_349

Geometric discrepancy: 0.4003

The information below is about IL_8P9A_349

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_71154.1

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

10

Unit IDs

7O81|1|B5|G|4483
7O81|1|B5|C|4484
7O81|1|B5|C|4485
7O81|1|B5|G|4486
7O81|1|B5|A|4487
7O81|1|B5|A|4488
7O81|1|B5|G|4489
*
7O81|1|B5|C|4697
7O81|1|B5|U|4698
7O81|1|B5|G|4699
7O81|1|B5|G|4700
7O81|1|B5|C|4701

Current chains

Chain B5

28S rRNA

Nearby chains