IL_7O81_357
3D structure
- PDB id
- 7O81 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- AUUA*(PSU)(PSU)CU
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7O81_357 not in the Motif Atlas
- Homologous match to IL_8P9A_269
- Geometric discrepancy: 0.3126
- The information below is about IL_8P9A_269
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_71194.1
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 29
Unit IDs
7O81|1|B5|A|1685
7O81|1|B5|U|1686
7O81|1|B5|U|1687
7O81|1|B5|A|1688
*
7O81|1|B5|PSU|1720
7O81|1|B5|PSU|1721
7O81|1|B5|C|1722
7O81|1|B5|U|1723
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain AJ
- Transfer RNA; tRNA
- Chain B7
- 5S ribosomal RNA; 5S rRNA
- Chain BD
- Ribosomal_L18_c domain-containing protein
- Chain BI
- 60S ribosomal protein L10
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