IL_7O9K_025
3D structure
- PDB id
- 7O9K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human mitochondrial ribosome large subunit assembly intermediate with MTERF4-NSUN4, MRM2, MTG1, the MALSU module, GTPBP5 and mtEF-Tu
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GGAA*UC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7O9K_025 not in the Motif Atlas
- Geometric match to IL_7RQB_066
- Geometric discrepancy: 0.0932
- The information below is about IL_7RQB_066
- Detailed Annotation
- Major groove platform; stack outside cWW
- Broad Annotation
- Major groove platform
- Motif group
- IL_50694.2
- Basepair signature
- cWW-tSH-cWW-L
- Number of instances in this motif group
- 27
Unit IDs
7O9K|1|A|G|2470
7O9K|1|A|G|2471
7O9K|1|A|A|2472
7O9K|1|A|A|2473
*
7O9K|1|A|U|2656
7O9K|1|A|C|2657
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain C
- Mitochondrial ribosome-associated GTPase 1
- Chain E
- 39S ribosomal protein L3, mitochondrial
- Chain L
- 39S ribosomal protein L14, mitochondrial
- Chain n
- rRNA methyltransferase 2, mitochondrial
Coloring options: