IL_7O9K_032

3D structure

PDB id

7O9K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial ribosome large subunit assembly intermediate with MTERF4-NSUN4, MRM2, MTG1, the MALSU module, GTPBP5 and mtEF-Tu

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GA*UACC

Length

6 nucleotides

Bulged bases

7O9K|1|A|A|2926

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O9K_032 not in the Motif Atlas

Homologous match to IL_7RQB_081

Geometric discrepancy: 0.0496

The information below is about IL_7RQB_081

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_42622.4

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

33

Unit IDs

7O9K|1|A|G|2733
7O9K|1|A|A|2734
*
7O9K|1|A|U|2925
7O9K|1|A|A|2926
7O9K|1|A|C|2927
7O9K|1|A|C|2928

Current chains

Chain A

16S rRNA

Nearby chains

Chain A1

5-methylcytosine rRNA methyltransferase NSUN4

Chain G

Mitochondrial ribosome-associated GTPase 2

Chain d

39S ribosomal protein L45, mitochondrial