IL_7O9K_044

3D structure

PDB id

7O9K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial ribosome large subunit assembly intermediate with MTERF4-NSUN4, MRM2, MTG1, the MALSU module, GTPBP5 and mtEF-Tu

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UCC*GAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O9K_044 not in the Motif Atlas

Geometric match to IL_4LFB_061

Geometric discrepancy: 0.116

The information below is about IL_4LFB_061

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

7O9K|1|A|U|3115
7O9K|1|A|C|3116
7O9K|1|A|C|3117
*
7O9K|1|A|G|3139
7O9K|1|A|A|3140
7O9K|1|A|A|3141

Current chains

Chain A

16S rRNA

Nearby chains

Chain E

39S ribosomal protein L3, mitochondrial

Chain L

39S ribosomal protein L14, mitochondrial

Chain u

Mitochondrial assembly of ribosomal large subunit protein 1