IL_7OA3_001

3D structure

PDB id

7OA3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Chili RNA aptamer in complex with DMHBO+ (Iridium hexammine co-crystallized form)

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

UGG*CG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OA3_001 not in the Motif Atlas

Geometric match to IL_7OAX_001

Geometric discrepancy: 0.1039

The information below is about IL_7OAX_001

Detailed Annotation

Stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_77710.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

27

Unit IDs

7OA3|1|A|U|8
7OA3|1|A|G|9
7OA3|1|A|G|10
*
7OA3|1|A|C|44
7OA3|1|A|G|45

Current chains

Chain A

Chili RNA Aptamer

Nearby chains

Chain B

Chili RNA Aptamer