IL_7OAX_010

3D structure

PDB id

7OAX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Chili RNA aptamer in complex with DMHBO+

Experimental method

X-RAY DIFFRACTION

Resolution

2.24 Å

Loop

Sequence

UGG*CG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OAX_010 not in the Motif Atlas

Geometric match to IL_7OAX_001

Geometric discrepancy: 0.0512

The information below is about IL_7OAX_001

Detailed Annotation

Stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_66635.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

27

Unit IDs

7OAX|1|D|U|8
7OAX|1|D|G|9
7OAX|1|D|G|10
*
7OAX|1|D|C|44
7OAX|1|D|G|45

Current chains

Chain D

Chili RNA Aptamer

Nearby chains

Chain A

Chili RNA Aptamer

Chain B

Chili RNA Aptamer