IL_7OBR_009

3D structure

PDB id

7OBR (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNC-SRP early complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UAAG*CAGUA

Length

9 nucleotides

Bulged bases

7OBR|1|1|G|232

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OBR_009 not in the Motif Atlas

Geometric match to IL_4V88_429

Geometric discrepancy: 0.3825

The information below is about IL_4V88_429

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

7OBR|1|1|U|117
7OBR|1|1|A|118
7OBR|1|1|A|119
7OBR|1|1|G|120
*
7OBR|1|1|C|230
7OBR|1|1|A|231
7OBR|1|1|G|232
7OBR|1|1|U|233
7OBR|1|1|A|234

Current chains

Chain 1

SRP RNA

Nearby chains

Chain u

Signal recognition particle subunit SRP68

Chain z

Signal recognition particle subunit SRP72