3D structure

PDB id
7OBR (explore in PDB, NAKB, or RNA 3D Hub)
Description
RNC-SRP early complex
Experimental method
ELECTRON MICROSCOPY
Resolution
2.8 Å

Loop

Sequence
GAAC*GAGUUCAAGAGGGC
Length
18 nucleotides
Bulged bases
7OBR|1|5|G|409, 7OBR|1|5|G|413
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7OBR_034 not in the Motif Atlas
Geometric match to IL_5TBW_014
Geometric discrepancy: 0.1416
The information below is about IL_5TBW_014
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_60992.7
Basepair signature
cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L
Number of instances in this motif group
6

Unit IDs

7OBR|1|5|G|387
7OBR|1|5|A|388
7OBR|1|5|A|389
7OBR|1|5|C|390
*
7OBR|1|5|G|401
7OBR|1|5|A|402
7OBR|1|5|G|403
7OBR|1|5|U|404
7OBR|1|5|U|405
7OBR|1|5|C|406
7OBR|1|5|A|407
7OBR|1|5|A|408
7OBR|1|5|G|409
7OBR|1|5|A|410
7OBR|1|5|G|411
7OBR|1|5|G|412
7OBR|1|5|G|413
7OBR|1|5|C|414

Current chains

Chain 5
28S rRNA

Nearby chains

Chain 8
5.8S ribosomal RNA; 5.8S rRNA
Chain P
uL22
Chain Y
Ribosomal protein L26
Chain l
eL39
Chain s
Dipeptidyl aminopeptidase B
Chain x
Signal recognition particle 54 kDa protein

Coloring options:


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