IL_7OBR_042

3D structure

PDB id

7OBR (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNC-SRP early complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GCG*CC

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OBR_042 not in the Motif Atlas

Geometric match to IL_1NTA_001

Geometric discrepancy: 0.3583

The information below is about IL_1NTA_001

Detailed Annotation

Stack outside cWW

Broad Annotation

Stack outside cWW

Motif group

IL_77710.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

26

Unit IDs

7OBR|1|5|G|497
7OBR|1|5|C|498
7OBR|1|5|G|499
*
7OBR|1|5|C|655
7OBR|1|5|C|656

Current chains

Chain 5

28S rRNA

Nearby chains

Chain C

60S ribosomal protein L4