IL_7OBR_149

3D structure

PDB id

7OBR (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNC-SRP early complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

7OBR|1|5|A|4548

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OBR_149 not in the Motif Atlas

Homologous match to IL_5TBW_113

Geometric discrepancy: 0.5808

The information below is about IL_5TBW_113

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

7OBR|1|5|C|4537
7OBR|1|5|G|4538
*
7OBR|1|5|C|4547
7OBR|1|5|A|4548
7OBR|1|5|G|4549

Current chains

Chain 5

28S rRNA

Nearby chains

Chain A

60S ribosomal protein L8

Chain s

Dipeptidyl aminopeptidase B