IL_7ODE_015

3D structure

PDB id

7ODE (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome LiCl core particle

Experimental method

ELECTRON MICROSCOPY

Resolution

2.84 Å

Loop

Sequence

UUAAC*GGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ODE_015 not in the Motif Atlas

Geometric match to IL_5J7L_258

Geometric discrepancy: 0.0745

The information below is about IL_5J7L_258

Detailed Annotation

AAA cross-strand stack

Broad Annotation

AAA cross-strand stack

Motif group

IL_66798.2

Basepair signature

cWW-L-R-L-R-tHS-cWW

Number of instances in this motif group

6

Unit IDs

7ODE|1|I|U|606
7ODE|1|I|U|607
7ODE|1|I|A|608
7ODE|1|I|A|609
7ODE|1|I|C|610
*
7ODE|1|I|G|618
7ODE|1|I|G|619
7ODE|1|I|G|620
7ODE|1|I|A|621
7ODE|1|I|G|622

Current chains

Chain I

23S rRNA

Nearby chains

Chain M

50S ribosomal protein L4