IL_7ODE_059
3D structure
- PDB id
- 7ODE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 50S ribosome LiCl core particle
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.84 Å
Loop
- Sequence
- CUGAG*CGAGAUGAG
- Length
- 14 nucleotides
- Bulged bases
- 7ODE|1|I|G|2780
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7ODE_059 not in the Motif Atlas
- Geometric match to IL_4WF9_099
- Geometric discrepancy: 0.0937
- The information below is about IL_4WF9_099
- Detailed Annotation
- tSH-tHS-tHW
- Broad Annotation
- tSH-tHS-tHW
- Motif group
- IL_04638.4
- Basepair signature
- cWW-tSH-tHW-tHS-L-cWW-L-L
- Number of instances in this motif group
- 6
Unit IDs
7ODE|1|I|C|2636
7ODE|1|I|U|2637
7ODE|1|I|G|2638
7ODE|1|I|A|2639
7ODE|1|I|G|2640
*
7ODE|1|I|C|2774
7ODE|1|I|G|2775
7ODE|1|I|A|2776
7ODE|1|I|G|2777
7ODE|1|I|A|2778
7ODE|1|I|U|2779
7ODE|1|I|G|2780
7ODE|1|I|A|2781
7ODE|1|I|G|2782
Current chains
- Chain I
- 23S rRNA
Nearby chains
- Chain L
- 50S ribosomal protein L3
- Chain R
- 50S ribosomal protein L13
Coloring options: