IL_7ODE_064

3D structure

PDB id

7ODE (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome LiCl core particle

Experimental method

ELECTRON MICROSCOPY

Resolution

2.84 Å

Loop

Sequence

GAUAAG*CGAAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ODE_064 not in the Motif Atlas

Homologous match to IL_8VTW_106

Geometric discrepancy: 0.1558

The information below is about IL_8VTW_106

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_49767.7

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

6

Unit IDs

7ODE|1|I|G|2737
7ODE|1|I|A|2738
7ODE|1|I|U|2739
7ODE|1|I|A|2740
7ODE|1|I|A|2741
7ODE|1|I|G|2742
*
7ODE|1|I|C|2762
7ODE|1|I|G|2763
7ODE|1|I|A|2764
7ODE|1|I|A|2766
7ODE|1|I|C|2767

Current chains

Chain I

23S rRNA

Nearby chains

Chain R

50S ribosomal protein L13