IL_7ODE_068

3D structure

PDB id

7ODE (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome LiCl core particle

Experimental method

ELECTRON MICROSCOPY

Resolution

2.84 Å

Loop

Sequence

UGUAAG*UUGAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ODE_068 not in the Motif Atlas

Geometric match to IL_7RQB_110

Geometric discrepancy: 0.0748

The information below is about IL_7RQB_110

Detailed Annotation

tHS double platform

Broad Annotation

No text annotation

Motif group

IL_83162.5

Basepair signature

cWW-tSH-L-tHH-L-cWW

Number of instances in this motif group

7

Unit IDs

7ODE|1|I|U|2847
7ODE|1|I|G|2848
7ODE|1|I|U|2849
7ODE|1|I|A|2850
7ODE|1|I|A|2851
7ODE|1|I|G|2852
*
7ODE|1|I|U|2865
7ODE|1|I|U|2866
7ODE|1|I|G|2867
7ODE|1|I|A|2868
7ODE|1|I|G|2869

Current chains

Chain I

23S rRNA

Nearby chains

Chain V

50S ribosomal protein L17

Chain X

50S ribosomal protein L19