IL_7ODS_023
3D structure
- PDB id
- 7ODS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State B of the human mitoribosomal large subunit assembly intermediate
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GGAA*UC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7ODS_023 not in the Motif Atlas
- Geometric match to IL_4WF9_064
- Geometric discrepancy: 0.1148
- The information below is about IL_4WF9_064
- Detailed Annotation
- Major groove platform; stack outside cWW
- Broad Annotation
- No text annotation
- Motif group
- IL_74641.2
- Basepair signature
- cWW-tSH-cWW-L
- Number of instances in this motif group
- 33
Unit IDs
7ODS|1|A|G|2470
7ODS|1|A|G|2471
7ODS|1|A|A|2472
7ODS|1|A|A|2473
*
7ODS|1|A|U|2656
7ODS|1|A|C|2657
Current chains
- Chain A
- 16S mitochondrial rRNA, DNA (30-MER),16S mitochondrial rRNA
Nearby chains
- Chain E
- 39S ribosomal protein L3, mitochondrial
- Chain L
- 39S ribosomal protein L14, mitochondrial
- Chain Q
- 39S ribosomal protein L19, mitochondrial
- Chain z
- rRNA methyltransferase 2, mitochondrial
Coloring options: