IL_7ODT_032

3D structure

PDB id

7ODT (explore in PDB, NAKB, or RNA 3D Hub)

Description

State C of the human mitoribosomal large subunit assembly intermediate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GA*UACC

Length

6 nucleotides

Bulged bases

7ODT|1|A|A|2926

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ODT_032 not in the Motif Atlas

Homologous match to IL_7RQB_081

Geometric discrepancy: 0.1005

The information below is about IL_7RQB_081

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_42622.4

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

33

Unit IDs

7ODT|1|A|G|2733
7ODT|1|A|A|2734
*
7ODT|1|A|U|2925
7ODT|1|A|A|2926
7ODT|1|A|C|2927
7ODT|1|A|C|2928

Current chains

Chain A

16S mitochondrial rRNA

Nearby chains

Chain d

39S ribosomal protein L45, mitochondrial

Chain t

Mitochondrial ribosome-associated GTPase 2

Chain x

5-methylcytosine rRNA methyltransferase NSUN4