IL_7ODT_044

3D structure

PDB id

7ODT (explore in PDB, NAKB, or RNA 3D Hub)

Description

State C of the human mitoribosomal large subunit assembly intermediate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

7ODT|1|A|A|3089

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ODT_044 not in the Motif Atlas

Geometric match to IL_5WWT_001

Geometric discrepancy: 0.2077

The information below is about IL_5WWT_001

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

160

Unit IDs

7ODT|1|A|C|3078
7ODT|1|A|G|3079
*
7ODT|1|A|C|3088
7ODT|1|A|A|3089
7ODT|1|A|G|3090

Current chains

Chain A

16S mitochondrial rRNA

Nearby chains

Chain t

Mitochondrial ribosome-associated GTPase 2

Chain x

5-methylcytosine rRNA methyltransferase NSUN4

Chain y

Transcription termination factor 4, mitochondrial