IL_7ODT_056

3D structure

PDB id

7ODT (explore in PDB, NAKB, or RNA 3D Hub)

Description

State C of the human mitoribosomal large subunit assembly intermediate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UAU*AA

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ODT_056 not in the Motif Atlas

Geometric match to IL_9DFE_348

Geometric discrepancy: 0.3297

The information below is about IL_9DFE_348

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

61

Unit IDs

7ODT|1|A|U|2744
7ODT|1|A|A|2745
7ODT|1|A|U|2746
*
7ODT|1|A|A|2802
7ODT|1|A|A|2803

Current chains

Chain A

16S mitochondrial rRNA

Nearby chains

Chain D

39S ribosomal protein L2, mitochondrial

Chain X

39S ribosomal protein L28, mitochondrial

Chain y

Transcription termination factor 4, mitochondrial