IL_7OE0_039

3D structure

PDB id

7OE0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pre-30S delta rbfA ribosomal subunit class F

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69 Å

Loop

Sequence

CAAAC*GGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OE0_039 not in the Motif Atlas

Homologous match to IL_5J7L_037

Geometric discrepancy: 0.1305

The information below is about IL_5J7L_037

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

7OE0|1|A|C|779
7OE0|1|A|A|780
7OE0|1|A|A|781
7OE0|1|A|A|782
7OE0|1|A|C|783
*
7OE0|1|A|G|799
7OE0|1|A|G|800
7OE0|1|A|U|801
7OE0|1|A|A|802
7OE0|1|A|G|803

Current chains

Chain A

16S rRNA

Nearby chains