7OE0 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_7OE0_001 | 1/A/12:22 | No text annotation | homologous HL_5J7L_001 HL_89881.5 | |
| HL_7OE0_002 | 1/A/82:87 | Externally structured | geometric HL_8C3A_022 NA | |
| HL_7OE0_003 | 1/A/158:163 | GNRA | homologous HL_5J7L_003 HL_37824.7 | |
| HL_7OE0_004 | 1/A/186:191 | GNRA | homologous HL_5J7L_004 HL_37824.7 | |
| HL_7OE0_005 | 1/A/207:212 | UNCG | homologous HL_5J7L_005 HL_34617.5 | |
| HL_7OE0_006 | 1/A/259:267 | GNRA related | homologous HL_5J7L_006 HL_84299.4 | |
| HL_7OE0_007 | 1/A/296:301 | GNRA | homologous HL_5J7L_007 HL_37824.7 | |
| HL_7OE0_008 | 1/A/320:333 | No text annotation | homologous HL_5J7L_008 HL_81205.3 | |
| HL_7OE0_009 | 1/A/342:347 | UNCG | homologous HL_6CZR_080 NA | |
| HL_7OE0_010 | 1/A/379:384 | GNRA | homologous HL_5J7L_010 HL_37824.7 | |
| HL_7OE0_011 | 1/A/419:424 | UNCG | homologous HL_5J7L_011 HL_34617.5 | |
| HL_7OE0_012 | 1/A/462:470 | No text annotation | geometric HL_8P9A_212 HL_97917.2 | |
| HL_7OE0_013 | 1/A/522:527 | No text annotation | geometric HL_4WF9_003 HL_75660.5 | |
| HL_7OE0_014 | 1/A/617:623 | No text annotation | homologous HL_4LFB_014 HL_10453.3 | |
| HL_7OE0_015 | 1/A/689:698 | No text annotation | homologous HL_4LFB_015 HL_75293.5 | |
| HL_7OE0_016 | 1/A/726:731 | GNRA | homologous HL_5J7L_016 HL_37824.7 | |
| HL_7OE0_017 | 1/A/786:796 | No text annotation | geometric HL_7VTI_001 HL_48417.5 | |
| HL_7OE0_018 | 1/A/840:846 | Externally structured | geometric HL_8C3A_022 NA | |
| HL_7OE0_019 | 1/A/862:867 | GNRA | homologous HL_5J7L_019 HL_37824.7 | |
| HL_7OE0_020 | 1/A/897:902 | GNRA | homologous HL_5J7L_020 HL_37824.7 | |
| HL_7OE0_021 | 1/A/963:972 | No text annotation | homologous HL_5J7L_021 HL_50779.4 | |
| HL_7OE0_022 | 1/A/1012:1017 | GNRA | homologous HL_4LFB_022 HL_37824.7 | |
| HL_7OE0_023 | 1/A/1028:1033 | Mini UNCG | geometric HL_4YAZ_004 HL_48778.2 | |
| HL_7OE0_024 | 1/A/1076:1081 | GNRA | homologous HL_5J7L_023 HL_37824.7 | |
| HL_7OE0_025 | 1/A/1089:1096 | T-loop related | homologous HL_4LFB_025 HL_77436.5 | |
| HL_7OE0_033 | 1/A/1132:1142 | No text annotation | ||
| HL_7OE0_034 | 1/A/1134:1141 | No text annotation | ||
| HL_7OE0_027 | 1/A/1165:1171 | GNRA | homologous HL_4LFB_027 HL_37824.7 | |
| HL_7OE0_028 | 1/A/1265:1270 | No text annotation | homologous HL_6CZR_099 NA | |
| HL_7OE0_029 | 1/A/1314:1323 | T-loop with 3 stacked bulged bases | homologous HL_5J7L_028 HL_02887.3 | |
| HL_7OE0_030 | 1/A/1356:1366 | No text annotation | homologous HL_4LFB_030 HL_06226.4 | |
| HL_7OE0_031 | 1/A/1449:1454 | UNCG | homologous HL_5J7L_030 HL_34617.5 | |
| HL_7OE0_032 | 1/A/1515:1520 | GNRA variation | geometric HL_5VSU_001 HL_37824.7 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_7OE0_026 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_7OE0_001 | 1/A/30:32, 1/A/552:553 | Single bulged G | homologous IL_5J7L_001 IL_00225.13 | |
| IL_7OE0_002 | 1/A/44:45, 1/A/396:398 | Single bulged A | homologous IL_5J7L_002 IL_31462.5 | |
| IL_7OE0_003 | 1/A/47:52, 1/A/359:361 | No text annotation | homologous IL_5J7L_003 IL_14177.2 | |
| IL_7OE0_004 | 1/A/54:56, 1/A/356:357 | Minor groove platform | homologous IL_4LFB_004 IL_51454.2 | |
| IL_7OE0_005 | 1/A/63:66, 1/A/103:104 | Multiple bulged bases | homologous IL_4LFB_005 IL_82107.4 | |
| IL_7OE0_006 | 1/A/67:69, 1/A/99:102 | Minor groove platform with extra cWW | homologous IL_5J7L_006 IL_90351.1 | |
| IL_7OE0_007 | 1/A/70:73, 1/A/97:98 | Minor groove platform | homologous IL_5J7L_007 IL_15052.4 | |
| IL_7OE0_008 | 1/A/75:76, 1/A/93:95 | Single bulged G | homologous IL_5J7L_395 IL_00225.13 | |
| IL_7OE0_009 | 1/A/128:131, 1/A/231:233 | Isolated non-canonical cWW pair | homologous IL_5J7L_009 IL_57744.1 | |
| IL_7OE0_010 | 1/A/132:136, 1/A/227:230 | Minor groove platform related | homologous IL_5J7L_010 IL_64231.5 | |
| IL_7OE0_011 | 1/A/144:146, 1/A/176:178 | Isolated cWH basepair | homologous IL_5J7L_011 IL_10167.5 | |
| IL_7OE0_012 | 1/A/147:153, 1/A/168:175 | tWH-tWH-tHW-tHW | homologous IL_5J7L_012 IL_80604.6 | |
| IL_7OE0_013 | 1/A/203:206, 1/A/213:214 | Minor groove platform | geometric IL_3IWN_005 IL_15052.4 | |
| IL_7OE0_014 | 1/A/242:247, 1/A/277:284 | Kink-turn with non-sequential stacking | homologous IL_5J7L_014 IL_46174.3 | |
| IL_7OE0_015 | 1/A/249:252, 1/A/274:275 | No text annotation | homologous IL_4LFB_012 IL_47074.2 | |
| IL_7OE0_016 | 1/A/292:293, 1/A/304:308 | C-loop | homologous IL_4LFB_013 IL_03109.3 | |
| IL_7OE0_017 | 1/A/367:369, 1/A/392:393 | Single bulged U | geometric IL_5J7L_017 IL_89505.4 | |
| IL_7OE0_018 | 1/A/371:375, 1/A/389:390 | C-loop | geometric IL_5J7L_018 IL_03109.3 | |
| IL_7OE0_019 | 1/A/375:376, 1/A/387:389 | Single bulged G | homologous IL_5J7L_019 IL_00225.13 | |
| IL_7OE0_020 | 1/A/409:416, 1/A/427:433 | No text annotation | homologous IL_5J7L_020 IL_28026.3 | |
| IL_7OE0_021 | 1/A/440:442, 1/A/492:497 | No text annotation | homologous IL_5J7L_021 IL_33323.1 | |
| IL_7OE0_022 | 1/A/446:450, 1/A/483:488 | tSH-tHW-tWW | homologous IL_5J7L_022 IL_88269.4 | |
| IL_7OE0_023 | 1/A/450:455, 1/A/477:483 | No text annotation | geometric IL_5J7L_023 IL_70801.1 | |
| IL_7OE0_024 | 1/A/457:459, 1/A/472:475 | No text annotation | ||
| IL_7OE0_025 | 1/A/460:462, 1/A/470:471 | No text annotation | ||
| IL_7OE0_026 | 1/A/504:511, 1/A/540:541 | SSU/LSU pseudoknot | homologous IL_5J7L_024 IL_41203.4 | |
| IL_7OE0_027 | 1/A/515:521, 1/A/528:536 | Kink-turn related | homologous IL_5J7L_025 IL_54177.4 | |
| IL_7OE0_028 | 1/A/569:575, 1/A/880:881 | No text annotation | homologous IL_5J7L_026 IL_38186.6 | |
| IL_7OE0_029 | 1/A/580:584, 1/A/757:761 | tSH-tHW-tHS | homologous IL_5J7L_027 IL_17136.7 | |
| IL_7OE0_030 | 1/A/594:596, 1/A/644:645 | Major groove platform | homologous IL_5J7L_028 IL_48076.6 | |
| IL_7OE0_031 | 1/A/597:598, 1/A/640:643 | Major groove minor groove platform; mini C-loop | homologous IL_4LFB_025 IL_68140.4 | |
| IL_7OE0_032 | 1/A/605:612, 1/A/628:633 | No text annotation | homologous IL_5J7L_030 IL_78349.3 | |
| IL_7OE0_033 | 1/A/654:655, 1/A/751:754 | Major groove platform; stack outside cWW | homologous IL_5J7L_031 IL_50694.7 | |
| IL_7OE0_034 | 1/A/659:660, 1/A/745:747 | Single stack bend | homologous IL_5J7L_032 IL_26793.1 | |
| IL_7OE0_035 | 1/A/662:666, 1/A/740:743 | Tandem non-canonical cWW pairs | homologous IL_5J7L_033 IL_85033.2 | |
| IL_7OE0_036 | 1/A/673:679, 1/A/711:717 | No text annotation | homologous IL_6CZR_363 NA | |
| IL_7OE0_037 | 1/A/684:688, 1/A/699:706 | Kink-turn | homologous IL_5J7L_035 IL_01488.3 | |
| IL_7OE0_038 | 1/A/774:778, 1/A/804:805 | Left turn | homologous IL_4LFB_032 IL_29346.2 | |
| IL_7OE0_064 | 1/A/774:783, 1/A/799:805 | No text annotation | ||
| IL_7OE0_039 | 1/A/779:783, 1/A/799:803 | tSH-tHW-tHS | homologous IL_5J7L_037 IL_17136.7 | |
| IL_7OE0_040 | 1/A/887:894, 1/A/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_5J7L_038 IL_41756.4 | |
| IL_7OE0_041 | 1/A/922:928, 1/A/1389:1395 | No text annotation | ||
| IL_7OE0_042 | 1/A/933:935, 1/A/1380:1384 | Minor groove platform | homologous IL_5J7L_041 IL_47078.3 | |
| IL_7OE0_043 | 1/A/953:954, 1/A/1226:1228 | No text annotation | homologous IL_6CZR_150 NA | |
| IL_7OE0_044 | 1/A/993:997, 1/A/1044:1045 | Minor groove platform | geometric IL_5J7L_043 IL_47078.3 | |
| IL_7OE0_045 | 1/A/998:999, 1/A/1041:1043 | Single stack bend | homologous IL_5J7L_044 IL_26793.1 | |
| IL_7OE0_046 | 1/A/1048:1050, 1/A/1208:1209 | Single bulged U | homologous IL_5J7L_046 IL_89505.4 | |
| IL_7OE0_047 | 1/A/1052:1056, 1/A/1204:1206 | Isolated cWS basepair | homologous IL_4LFB_044 IL_76319.5 | |
| IL_7OE0_048 | 1/A/1057:1058, 1/A/1199:1203 | Minor groove platform | homologous IL_4LFB_045 IL_95583.2 | |
| IL_7OE0_049 | 1/A/1060:1061, 1/A/1195:1197 | Single bulged A | geometric IL_5J7L_049 IL_31462.5 | |
| IL_7OE0_050 | 1/A/1061:1063, 1/A/1193:1195 | Isolated non-canonical cWW pair | homologous IL_4LFB_047 IL_28037.2 | |
| IL_7OE0_051 | 1/A/1124:1128, 1/A/1144:1149 | No text annotation | homologous IL_5J7L_051 IL_06691.1 | |
| IL_7OE0_052 | 1/A/1129:1132, 1/A/1142:1143 | Minor groove platform | homologous IL_5J7L_052 IL_15052.4 | |
| IL_7OE0_065 | 1/A/1132:1134, 1/A/1141:1142 | Single stack bend | geometric IL_7A0S_054 IL_26793.1 | |
| IL_7OE0_053 | 1/A/1158:1161, 1/A/1175:1181 | No text annotation | homologous IL_5J7L_053 IL_42032.1 | |
| IL_7OE0_067 | 1/A/1247:1253, 1/A/1284:1290 | No text annotation | homologous IL_5J7L_054 IL_09129.2 | |
| IL_7OE0_055 | 1/A/1255:1258, 1/A/1277:1282 | 180 degree turn | homologous IL_5J7L_055 IL_11344.2 | |
| IL_7OE0_056 | 1/A/1259:1263, 1/A/1272:1276 | Triple sheared | homologous IL_5J7L_056 IL_17948.2 | |
| IL_7OE0_057 | 1/A/1303:1308, 1/A/1329:1334 | No text annotation | homologous IL_4LFB_055 IL_85536.2 | |
| IL_7OE0_058 | 1/A/1412:1416, 1/A/1484:1488 | No text annotation | ||
| IL_7OE0_059 | 1/A/1416:1419, 1/A/1481:1484 | Double sheared | homologous IL_6CZR_169 NA | |
| IL_7OE0_061 | 1/A/1430:1435, 1/A/1466:1470 | Triple sheared related | geometric IL_4V9F_018 IL_97631.1 | |
| IL_7OE0_066 | 1/A/1440:1442, 1/A/1460:1461 | Single bulged A | homologous IL_5J7L_064 IL_31462.5 | |
| IL_7OE0_063 | 1/A/1442:1448, 1/A/1455:1460 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_7OE0_054 | No text annotation | ||
| IL_7OE0_060 | Isolated non-canonical cWW pair | ||
| IL_7OE0_062 | Isolated non-canonical cWW with bulges |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_7OE0_001 | 1/A/46:47, 1/A/361:367, 1/A/393:395 | No text annotation | homologous J3_5J7L_001 J3_67856.4 | |
| J3_7OE0_013 | 1/A/46:52, 1/A/359:367, 1/A/393:395 | No text annotation | homologous J3_5J7L_050 J3_46317.4 | |
| J3_7OE0_002 | 1/A/586:588, 1/A/651:654, 1/A/754:755 | No text annotation | homologous J3_5J7L_002 J3_56052.5 | |
| J3_7OE0_014 | 1/A/586:588, 1/A/651:655, 1/A/751:755 | No text annotation | homologous J3_5J7L_051 J3_17385.4 | |
| J3_7OE0_003 | 1/A/670:673, 1/A/717:725, 1/A/732:736 | No text annotation | geometric J3_4V88_033 NA | |
| J3_7OE0_004 | 1/A/826:829, 1/A/857:861, 1/A/868:874 | No text annotation | homologous J3_5J7L_004 J3_85054.4 | |
| J3_7OE0_015 | 1/A/933:939, 1/A/1344:1350, 1/A/1372:1384 | No text annotation | ||
| J3_7OE0_005 | 1/A/943:946, 1/A/1235:1237, 1/A/1337:1340 | No text annotation | homologous J3_4LFB_003 J3_52655.4 | |
| J3_7OE0_006 | 1/A/955:962, 1/A/973:984, 1/A/1221:1225 | No text annotation | homologous J3_5J7L_006 J3_83516.4 | |
| J3_7OE0_007 | 1/A/990:993, 1/A/1045:1047, 1/A/1210:1215 | No text annotation | homologous J3_6CZR_021 NA | |
| J3_7OE0_016 | 1/A/990:997, 1/A/1044:1047, 1/A/1210:1215 | No text annotation | homologous J3_5J7L_053 J3_76475.2 | |
| J3_7OE0_008 | 1/A/1003:1006, 1/A/1023:1027, 1/A/1034:1037 | No text annotation | ||
| J3_7OE0_009 | 1/A/1063:1068, 1/A/1107:1113, 1/A/1187:1193 | No text annotation | homologous J3_5J7L_008 J3_08394.3 | |
| J3_7OE0_010 | 1/A/1073:1074, 1/A/1083:1087, 1/A/1098:1102 | No text annotation | homologous J3_6CZR_024 NA | |
| J3_7OE0_011 | 1/A/1116:1118, 1/A/1155:1158, 1/A/1181:1184 | No text annotation | homologous J3_5J7L_010 J3_82365.4 | |
| J3_7OE0_017 | 1/A/1116:1118, 1/A/1155:1161, 1/A/1175:1184 | No text annotation | homologous J3_5J7L_054 J3_17791.2 | |
| J3_7OE0_012 | 1/A/1237:1241, 1/A/1296:1303, 1/A/1334:1337 | No text annotation | homologous J3_5J7L_011 J3_37047.6 | |
| J4_7OE0_001 | 1/A/115:122, 1/A/239:240, 1/A/286:289, 1/A/311:312 | No text annotation | homologous J4_6CZR_027 NA | |
| J4_7OE0_002 | 1/A/142:144, 1/A/178:184, 1/A/193:198, 1/A/219:221 | No text annotation | homologous J4_5J7L_002 J4_01665.1 | |
| J4_7OE0_003 | 1/A/575:577, 1/A/764:769, 1/A/810:821, 1/A/879:880 | No text annotation | homologous J4_5J7L_003 J4_61885.6 | |
| J5_7OE0_001 | 1/A/36:39, 1/A/403:406, 1/A/436:440, 1/A/497:500, 1/A/545:548 | No text annotation | homologous J5_5J7L_001 J5_92941.1 | |
| J5_7OE0_002 | 1/A/36:39, 1/A/403:406, 1/A/436:442, 1/A/492:500, 1/A/545:548 | No text annotation | homologous J5_5J7L_002 J5_67416.1 | |
| J5_7OE0_003 | 1/A/58:61, 1/A/106:113, 1/A/314:316, 1/A/337:339, 1/A/350:354 | No text annotation | homologous J5_5J7L_003 J5_59910.6 |
Problematic loops
No problematic loops
Coloring options: