IL_7OE0_062

3D structure

PDB id

7OE0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pre-30S delta rbfA ribosomal subunit class F

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69 Å

Loop

Sequence

GUAG*CGC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OE0_062 not in the Motif Atlas

Geometric match to IL_4PKD_001

Geometric discrepancy: 0.1599

The information below is about IL_4PKD_001

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

7OE0|1|A|G|1439
7OE0|1|A|U|1440
7OE0|1|A|A|1441
7OE0|1|A|G|1442
*
7OE0|1|A|C|1460
7OE0|1|A|G|1461
7OE0|1|A|C|1462

Current chains

Chain A

16S rRNA

Nearby chains

Chain T

30S ribosomal protein S20