IL_7OE1_076

3D structure

PDB id

7OE1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S ribosomal subunit from E. coli

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

GCCC*GUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OE1_076 not in the Motif Atlas

Geometric match to IL_8CRE_467

Geometric discrepancy: 0.2373

The information below is about IL_8CRE_467

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_25873.2

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

7OE1|1|A|G|1401
7OE1|1|A|C|1402
7OE1|1|A|C|1403
7OE1|1|A|C|1404
*
7OE1|1|A|G|1497
7OE1|1|A|U|1498
7OE1|1|A|A|1499
7OE1|1|A|A|1500
7OE1|1|A|C|1501

Current chains

Chain A

16S rRNA

Nearby chains