IL_7OF1_043
3D structure
- PDB id
- 7OF1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nog1-TAP associated immature ribosomal particle population A from S. cerevisiae
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GACACCACAAAA*UGAAAAUGGAUGGCGC
- Length
- 28 nucleotides
- Bulged bases
- 7OF1|1|1|C|1196, 7OF1|1|1|C|1201, 7OF1|1|1|A|1302
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7OF1_043 not in the Motif Atlas
- Geometric match to IL_5TBW_052
- Geometric discrepancy: 0.3736
- The information below is about IL_5TBW_052
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_53762.1
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
7OF1|1|1|G|1194
7OF1|1|1|A|1195
7OF1|1|1|C|1196
7OF1|1|1|A|1197
7OF1|1|1|C|1198
7OF1|1|1|C|1199
7OF1|1|1|A|1200
7OF1|1|1|C|1201
7OF1|1|1|A|1202
7OF1|1|1|A|1203
7OF1|1|1|A|1204
7OF1|1|1|A|1205
*
7OF1|1|1|U|1299
7OF1|1|1|G|1300
7OF1|1|1|A|1301
7OF1|1|1|A|1302
7OF1|1|1|A|1303
7OF1|1|1|A|1304
7OF1|1|1|U|1305
7OF1|1|1|G|1306
7OF1|1|1|G|1307
7OF1|1|1|A|1308
7OF1|1|1|U|1309
7OF1|1|1|G|1310
7OF1|1|1|G|1311
7OF1|1|1|C|1312
7OF1|1|1|G|1313
7OF1|1|1|C|1314
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain 3
- 5S ribosomal RNA; 5S rRNA
- Chain B
- 60S ribosomal protein L3
- Chain F
- 60S ribosomal protein L7-A
- Chain O
- 60S ribosomal protein L16-A
- Chain b
- Nucleolar GTP-binding protein 1
- Chain f
- 60S ribosomal protein L33-A
- Chain r
- Ribosome biogenesis protein NSA2
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