IL_7OF1_067

3D structure

PDB id

7OF1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nog1-TAP associated immature ribosomal particle population A from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAA*UC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OF1_067 not in the Motif Atlas

Geometric match to IL_6CZR_139

Geometric discrepancy: 0.1878

The information below is about IL_6CZR_139

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_50694.6

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

28

Unit IDs

7OF1|1|1|G|1898
7OF1|1|1|G|1899
7OF1|1|1|A|1900
7OF1|1|1|A|1901
*
7OF1|1|1|U|2336
7OF1|1|1|C|2337

Current chains

Chain 1

25S rRNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain V

60S ribosomal protein L23-A