3D structure

PDB id
7OF1 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Nog1-TAP associated immature ribosomal particle population A from S. cerevisiae
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
CGAUGG*UGUUGACG
Length
14 nucleotides
Bulged bases
7OF1|1|1|U|2159, 7OF1|1|1|U|2175, 7OF1|1|1|C|2179
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7OF1_073 not in the Motif Atlas
Homologous match to IL_5TBW_083
Geometric discrepancy: 0.1581
The information below is about IL_5TBW_083
Detailed Annotation
Kink-turn related
Broad Annotation
No text annotation
Motif group
IL_64509.1
Basepair signature
cWW-tWW-tWW-tSS-L-cWW
Number of instances in this motif group
2

Unit IDs

7OF1|1|1|C|2156
7OF1|1|1|G|2157
7OF1|1|1|A|2158
7OF1|1|1|U|2159
7OF1|1|1|G|2160
7OF1|1|1|G|2161
*
7OF1|1|1|U|2173
7OF1|1|1|G|2174
7OF1|1|1|U|2175
7OF1|1|1|U|2176
7OF1|1|1|G|2177
7OF1|1|1|A|2178
7OF1|1|1|C|2179
7OF1|1|1|G|2180

Current chains

Chain 1
25S rRNA

Nearby chains

Chain A
60S ribosomal protein L2-A
Chain p
60S ribosomal protein L43-A

Coloring options:


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