3D structure

PDB id
7OF1 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Nog1-TAP associated immature ribosomal particle population A from S. cerevisiae
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
CU*ACAG
Length
6 nucleotides
Bulged bases
None detected
QA status
Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7OF1_079 not in the Motif Atlas
Geometric match to IL_6AZ4_001
Geometric discrepancy: 0.258
The information below is about IL_6AZ4_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_69145.1
Basepair signature
cWW-L-cWW-L
Number of instances in this motif group
5

Unit IDs

7OF1|1|1|C|2407
7OF1|1|1|U|2411
*
7OF1|1|1|A|2811
7OF1|1|1|C|2812
7OF1|1|1|A|2813
7OF1|1|1|G|2814

Current chains

Chain 1
25S rRNA

Nearby chains

Chain C
60S ribosomal protein L4-A
Chain m
Nucleolar GTP-binding protein 2
Chain r
Ribosome biogenesis protein NSA2

Coloring options:


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