3D structure

PDB id
7OF1 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Nog1-TAP associated immature ribosomal particle population A from S. cerevisiae
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
UUUG*CUUA
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7OF1_106 not in the Motif Atlas
Geometric match to IL_3R2D_002
Geometric discrepancy: 0.235
The information below is about IL_3R2D_002
Detailed Annotation
Tandem non-canonical cWW pairs
Broad Annotation
No text annotation
Motif group
IL_77658.1
Basepair signature
cWW-cWW-cWW-cWW
Number of instances in this motif group
34

Unit IDs

7OF1|1|1|U|3300
7OF1|1|1|U|3301
7OF1|1|1|U|3302
7OF1|1|1|G|3303
*
7OF1|1|1|C|3311
7OF1|1|1|U|3312
7OF1|1|1|U|3313
7OF1|1|1|A|3314

Current chains

Chain 1
25S rRNA

Nearby chains

Chain B
60S ribosomal protein L3
Chain P
60S ribosomal protein L17-A
Chain d
60S ribosomal protein L31-A

Coloring options:


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