IL_7OF5_012
3D structure
- PDB id
- 7OF5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a human mitochondrial ribosome large subunit assembly intermediate in complex with MTERF4-NSUN4 and GTPBP5 (dataset2).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GAG*CUACC
- Length
- 8 nucleotides
- Bulged bases
- 7OF5|1|A|A|1986, 7OF5|1|A|U|1998, 7OF5|1|A|A|1999, 7OF5|1|A|C|2000
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7OF5_012 not in the Motif Atlas
- Homologous match to IL_5J7L_265
- Geometric discrepancy: 0.0737
- The information below is about IL_5J7L_265
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_06549.2
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
7OF5|1|A|G|1985
7OF5|1|A|A|1986
7OF5|1|A|G|1987
*
7OF5|1|A|C|1997
7OF5|1|A|U|1998
7OF5|1|A|A|1999
7OF5|1|A|C|2000
7OF5|1|A|C|2001
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain 2
- 39S ribosomal protein L34, mitochondrial
- Chain D
- 39S ribosomal protein L2, mitochondrial
- Chain F
- 39S ribosomal protein L4, mitochondrial
- Chain T
- 39S ribosomal protein L22, mitochondrial
- Chain X
- 39S ribosomal protein L28, mitochondrial
- Chain d
- 39S ribosomal protein L45, mitochondrial
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