IL_7OF5_017

3D structure

PDB id

7OF5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a human mitochondrial ribosome large subunit assembly intermediate in complex with MTERF4-NSUN4 and GTPBP5 (dataset2).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UAG*CAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OF5_017 not in the Motif Atlas

Geometric match to IL_4V88_406

Geometric discrepancy: 0.2571

The information below is about IL_4V88_406

Detailed Annotation

Isolated near basepair

Broad Annotation

Isolated near basepair

Motif group

IL_76004.2

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

18

Unit IDs

7OF5|1|A|U|2168
7OF5|1|A|A|2169
7OF5|1|A|G|2170
*
7OF5|1|A|C|2190
7OF5|1|A|A|2191
7OF5|1|A|A|2192

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain I

39S ribosomal protein L10, mitochondrial

Chain J

39S ribosomal protein L11, mitochondrial

Chain k

39S ribosomal protein L53, mitochondrial