IL_7OF7_031

3D structure

PDB id

7OF7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a human mitochondrial ribosome large subunit assembly intermediate in complex with MTERF4-NSUN4 and GTPBP5 (dataset1).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GA*UACC

Length

6 nucleotides

Bulged bases

7OF7|1|A|A|2926

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OF7_031 not in the Motif Atlas

Homologous match to IL_7RQB_081

Geometric discrepancy: 0.0916

The information below is about IL_7RQB_081

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_42622.4

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

33

Unit IDs

7OF7|1|A|G|2733
7OF7|1|A|A|2734
*
7OF7|1|A|U|2925
7OF7|1|A|A|2926
7OF7|1|A|C|2927
7OF7|1|A|C|2928

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain C

5-methylcytosine rRNA methyltransferase NSUN4

Chain x

Mitochondrial ribosome-associated GTPase 2