IL_7OH3_076

3D structure

PDB id

7OH3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nog1-TAP associated immature ribosomal particle population B from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UCAAAGU*AACCAAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OH3_076 not in the Motif Atlas

Homologous match to IL_8C3A_093

Geometric discrepancy: 0.1771

The information below is about IL_8C3A_093

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36973.8

Basepair signature

cWW-tSH-L-R-L-R-L-R-cWW-cWW

Number of instances in this motif group

3

Unit IDs

7OH3|1|1|U|2211
7OH3|1|1|C|2212
7OH3|1|1|A|2213
7OH3|1|1|A|2214
7OH3|1|1|A|2215
7OH3|1|1|G|2216
7OH3|1|1|U|2217
*
7OH3|1|1|A|2228
7OH3|1|1|A|2229
7OH3|1|1|C|2230
7OH3|1|1|C|2231
7OH3|1|1|A|2232
7OH3|1|1|A|2233
7OH3|1|1|G|2234

Current chains

Chain 1

25S rRNA

Nearby chains

Chain i

60S ribosomal protein L36-A