IL_7OH3_087

3D structure

PDB id

7OH3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nog1-TAP associated immature ribosomal particle population B from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AGUCC*GCU

Length

8 nucleotides

Bulged bases

7OH3|1|1|U|2771, 7OH3|1|1|C|2772

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OH3_087 not in the Motif Atlas

Geometric match to IL_6CZR_157

Geometric discrepancy: 0.2978

The information below is about IL_6CZR_157

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_08069.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

30

Unit IDs

7OH3|1|1|A|2769
7OH3|1|1|G|2770
7OH3|1|1|U|2771
7OH3|1|1|C|2772
7OH3|1|1|C|2773
*
7OH3|1|1|G|2787
7OH3|1|1|C|2788
7OH3|1|1|U|2789

Current chains

Chain 1

25S rRNA

Nearby chains

Chain L

60S ribosomal protein L13-A

Chain a

60S ribosomal protein L28