IL_7OHP_058

3D structure

PDB id

7OHP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL25 expression shut down, population A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGGG*CUUUG

Length

9 nucleotides

Bulged bases

7OHP|1|1|U|3382

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OHP_058 not in the Motif Atlas

Geometric match to IL_3NPQ_006

Geometric discrepancy: 0.3809

The information below is about IL_3NPQ_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_93503.1

Basepair signature

cWW-cWW-L-R-L-cWW-L

Number of instances in this motif group

4

Unit IDs

7OHP|1|1|C|3324
7OHP|1|1|G|3325
7OHP|1|1|G|3326
7OHP|1|1|G|3327
*
7OHP|1|1|C|3379
7OHP|1|1|U|3380
7OHP|1|1|U|3381
7OHP|1|1|U|3382
7OHP|1|1|G|3383

Current chains

Chain 1

25S rRNA

Nearby chains

Chain B

60S ribosomal protein L3