IL_7OHQ_076

3D structure

PDB id

7OHQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nog1-TAP associated immature ribosomal particle population C from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UCAAAGU*AACCAAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OHQ_076 not in the Motif Atlas

Homologous match to IL_8C3A_093

Geometric discrepancy: 0.1558

The information below is about IL_8C3A_093

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36973.8

Basepair signature

cWW-tSH-L-R-L-R-L-R-cWW-cWW

Number of instances in this motif group

3

Unit IDs

7OHQ|1|1|U|2211
7OHQ|1|1|C|2212
7OHQ|1|1|A|2213
7OHQ|1|1|A|2214
7OHQ|1|1|A|2215
7OHQ|1|1|G|2216
7OHQ|1|1|U|2217
*
7OHQ|1|1|A|2228
7OHQ|1|1|A|2229
7OHQ|1|1|C|2230
7OHQ|1|1|C|2231
7OHQ|1|1|A|2232
7OHQ|1|1|A|2233
7OHQ|1|1|G|2234

Current chains

Chain 1

25S rRNA

Nearby chains

Chain i

60S ribosomal protein L36-A