IL_7OHQ_088

3D structure

PDB id

7OHQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nog1-TAP associated immature ribosomal particle population C from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGUCC*GCU

Length

8 nucleotides

Bulged bases

7OHQ|1|1|U|2771, 7OHQ|1|1|C|2772

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OHQ_088 not in the Motif Atlas

Geometric match to IL_5Z1I_003

Geometric discrepancy: 0.3898

The information below is about IL_5Z1I_003

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_31737.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

11

Unit IDs

7OHQ|1|1|A|2769
7OHQ|1|1|G|2770
7OHQ|1|1|U|2771
7OHQ|1|1|C|2772
7OHQ|1|1|C|2773
*
7OHQ|1|1|G|2787
7OHQ|1|1|C|2788
7OHQ|1|1|U|2789

Current chains

Chain 1

25S rRNA

Nearby chains

Chain L

60S ribosomal protein L13-A

Chain a

60S ribosomal protein L28