IL_7OHQ_138

3D structure

PDB id

7OHQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nog1-TAP associated immature ribosomal particle population C from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGGG*CUUUG

Length

9 nucleotides

Bulged bases

7OHQ|1|1|U|3382

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OHQ_138 not in the Motif Atlas

Geometric match to IL_3NPQ_006

Geometric discrepancy: 0.3911

The information below is about IL_3NPQ_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65740.2

Basepair signature

cWW-L-R-L-R-cWW

Number of instances in this motif group

4

Unit IDs

7OHQ|1|1|C|3324
7OHQ|1|1|G|3325
7OHQ|1|1|G|3326
7OHQ|1|1|G|3327
*
7OHQ|1|1|C|3379
7OHQ|1|1|U|3380
7OHQ|1|1|U|3381
7OHQ|1|1|U|3382
7OHQ|1|1|G|3383

Current chains

Chain 1

25S rRNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain d

60S ribosomal protein L31-A