IL_7OHR_049

3D structure

PDB id

7OHR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nog1-TAP associated immature ribosomal particle population E from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

4.72 Å

Loop

Sequence

UCAAC*GGA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OHR_049 not in the Motif Atlas

Geometric match to IL_6JDV_004

Geometric discrepancy: 0.2522

The information below is about IL_6JDV_004

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.12

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

22

Unit IDs

7OHR|1|1|U|1501
7OHR|1|1|C|1502
7OHR|1|1|A|1503
7OHR|1|1|A|1504
7OHR|1|1|C|1505
*
7OHR|1|1|G|1513
7OHR|1|1|G|1514
7OHR|1|1|A|1515

Current chains

Chain 1

25S rRNA

Nearby chains

Chain P

60S ribosomal protein L17-A

Chain R

60S ribosomal protein L19-A