IL_7OHR_072

3D structure

PDB id

7OHR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nog1-TAP associated immature ribosomal particle population E from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

4.72 Å

Loop

Sequence

CCG*CGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OHR_072 not in the Motif Atlas

Geometric match to IL_5MWI_004

Geometric discrepancy: 0.2573

The information below is about IL_5MWI_004

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

7OHR|1|1|C|2959
7OHR|1|1|C|2960
7OHR|1|1|G|2961
*
7OHR|1|1|C|2970
7OHR|1|1|G|2972
7OHR|1|1|G|2973

Current chains

Chain 1

25S rRNA

Nearby chains

Chain l

60S ribosome subunit biogenesis protein NIP7

Chain w

27S pre-rRNA (guanosine(2922)-2'-O)-methyltransferase