IL_7OHS_004

3D structure

PDB id

7OHS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nog1-TAP associated immature ribosomal particle population F from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

4.38 Å

Loop

Sequence

CUGAACUU*AUCAAUAAG

Length

17 nucleotides

Bulged bases

7OHS|1|1|A|49

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OHS_004 not in the Motif Atlas

Homologous match to IL_8C3A_005

Geometric discrepancy: 0.242

The information below is about IL_8C3A_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_35728.2

Basepair signature

cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW

Number of instances in this motif group

3

Unit IDs

7OHS|1|1|C|31
7OHS|1|1|U|32
7OHS|1|1|G|33
7OHS|1|1|A|34
7OHS|1|1|A|35
7OHS|1|1|C|36
7OHS|1|1|U|37
7OHS|1|1|U|38
*
7OHS|1|1|A|45
7OHS|1|1|U|46
7OHS|1|1|C|47
7OHS|1|1|A|48
7OHS|1|1|A|49
7OHS|1|1|U|50
7OHS|1|1|A|51
7OHS|1|1|A|52
7OHS|1|1|G|53

Current chains

Chain 1

25S rRNA

Nearby chains

Chain N

60S ribosomal protein L15-A

Chain j

60S ribosomal protein L37-A