IL_7OHT_007

3D structure

PDB id

7OHT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL2 expression shut down, population A

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

UUUC*GAUA

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OHT_007 not in the Motif Atlas

Geometric match to IL_4EYA_008

Geometric discrepancy: 0.3

The information below is about IL_4EYA_008

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

7OHT|1|1|U|954
7OHT|1|1|U|955
7OHT|1|1|U|956
7OHT|1|1|C|957
*
7OHT|1|1|G|964
7OHT|1|1|A|965
7OHT|1|1|U|966
7OHT|1|1|A|967

Current chains

Chain 1

25S rRNA

Nearby chains

Chain T

60S ribosomal protein L21-A