IL_7OHT_018

3D structure

PDB id

7OHT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL2 expression shut down, population A

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

7OHT|1|1|A|1263

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OHT_018 not in the Motif Atlas

Geometric match to IL_5TBW_056

Geometric discrepancy: 0.2627

The information below is about IL_5TBW_056

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

7OHT|1|1|G|1262
7OHT|1|1|A|1263
7OHT|1|1|G|1264
7OHT|1|1|U|1265
7OHT|1|1|G|1266
*
7OHT|1|1|C|1275
7OHT|1|1|U|1276
7OHT|1|1|C|1277

Current chains

Chain 1

25S rRNA

Nearby chains

Chain W

Ribosome assembly factor MRT4

Chain r

Ribosome biogenesis protein NSA2