IL_7OHT_021

3D structure

PDB id

7OHT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL2 expression shut down, population A

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

UGAGAAGC*GUCGAA

Length

14 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7OHT|1|1|U|1388
7OHT|1|1|G|1389
7OHT|1|1|A|1390
7OHT|1|1|G|1392
7OHT|1|1|A|1393
7OHT|1|1|A|1394
7OHT|1|1|G|1395
7OHT|1|1|C|1396
*
7OHT|1|1|G|1414
7OHT|1|1|U|1415
7OHT|1|1|C|1416
7OHT|1|1|G|1417
7OHT|1|1|A|1418
7OHT|1|1|A|1419

Current chains

Chain 1

25S rRNA

Nearby chains

Chain 2

5.8S ribosomal RNA; 5.8S rRNA

Chain C

60S ribosomal protein L4-A

Chain e

60S ribosomal protein L32